# cmsearch :: search a sequence database with an RNA CM
# INFERNAL 1.0.2 (October 2009)
# Copyright (C) 2009 HHMI Janelia Farm Research Campus
# Freely distributed under the GNU General Public License (GPLv3)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# command:    cmsearch -E 0.001 --fil-no-hmm --fil-no-qdb purine.2.c.cm C.psychrerythraea.genome.fa
# date:       Sat Oct 24 11:22:26 2009
# num seqs:   1
# dbsize(Mb): 10.746360
#
# Pre-search info for CM 1: purine.2-1
#
#                                  cutoffs            predictions     
#                            -------------------  --------------------
# rnd  mod  alg  cfg   beta     E value   bit sc     surv     run time
# ---  ---  ---  ---  -----  ----------  -------  -------  -----------
    1   cm  ins  loc  1e-15     1.0e-03    28.91  8.9e-09  00:02:30.79
CM: purine.2-1
>gi|71143482|gb|CP000083.1|

  Plus strand results:

 Query = 19 - 87, Target = 1401709 - 1401775
 Score = 39.23, E = 1.539e-06, P = 5.847e-13, GC =  45

           (((((((,,,<<<-<<<_______>>>->>>,,,,,,,,<<<<<<_________>>>>>>
        19 ACucauaUAagcCcGaGAAUAUGGCuCgGgcGUuUCUACcgggcgACCGuAAAucgcccg 78      
           ::UC:UAUAA:CCC: : AUAUGG: :GGG:GU+UCUACC:GG:  C  UAA   :CC:G
   1401709 CUUCGUAUAACCCCAGUGAUAUGGAUUGGGGGUCUCUACCAGGAACCAAUAA--AUCCUG 1401766 

           ,,)))))))
        79 ACuaugaGU 87      
           A UA:GA::
   1401767 AUUACGAAG 1401775 


#
# Post-search info for CM 1: purine.2-1
#
#                              number of hits       surv fraction  
#                            -------------------  -----------------
# rnd  mod  alg  cfg   beta    expected   actual  expected   actual
# ---  ---  ---  ---  -----  ----------  -------  --------  -------
    1   cm  ins  loc  1e-15     1.0e-03        1   8.9e-09  6.2e-06
#
# expected time    actual time
# -------------  -------------
    03:13:25.22    03:55:36.00
//
#
# CPU time: 14132.33u 3.67s 03:55:36.00 Elapsed: 03:55:36
